plugin spot colocalization algorithm Search Results


99
Oxford Instruments imaris triple colocalization plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Imaris Triple Colocalization Plugin, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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imaris triple colocalization plugin - by Bioz Stars, 2026-03
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90
Institut Curie jacop (just another colocalization plugin) plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Jacop (Just Another Colocalization Plugin) Plugin, supplied by Institut Curie, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/jacop (just another colocalization plugin) plugin/product/Institut Curie
Average 90 stars, based on 1 article reviews
jacop (just another colocalization plugin) plugin - by Bioz Stars, 2026-03
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90
Carl Zeiss zen blue 3.4 software
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Zen Blue 3.4 Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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zen blue 3.4 software - by Bioz Stars, 2026-03
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90
VISITRON Inc metamorph® 5.0 software
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Metamorph® 5.0 Software, supplied by VISITRON Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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metamorph® 5.0 software - by Bioz Stars, 2026-03
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90
MetaMorph Inc colocalization plugin on
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Colocalization Plugin On, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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colocalization plugin on - by Bioz Stars, 2026-03
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90
MathWorks Inc matlab v.r2014b
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Matlab V.R2014b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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90
Dawley Inc sprague–dawley
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Sprague–Dawley, supplied by Dawley Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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90
MathWorks Inc spots colocalize matlab plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Spots Colocalize Matlab Plugin, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/spots colocalize matlab plugin/product/MathWorks Inc
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spots colocalize matlab plugin - by Bioz Stars, 2026-03
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90
MathWorks Inc plugin colocalize spots
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Plugin Colocalize Spots, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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plugin colocalize spots - by Bioz Stars, 2026-03
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99
Bio-Rad resource source identifier fiji imagej coloc2 plugin
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Resource Source Identifier Fiji Imagej Coloc2 Plugin, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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90
MathWorks Inc plugin surface-surface colocalization
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Plugin Surface Surface Colocalization, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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plugin surface-surface colocalization - by Bioz Stars, 2026-03
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99
Nikon nis element plugin denoise ai
Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); <t>colocalization,</t> %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).
Nis Element Plugin Denoise Ai, supplied by Nikon, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); colocalization, %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).

Journal: Neuron

Article Title: Architecture of the Mouse Brain Synaptome

doi: 10.1016/j.neuron.2018.07.007

Figure Lengend Snippet: Whole-Brain-Scale Mapping of PSD95 and SAP102 (A) PSD95 (green) and SAP102 (magenta) expression in stitched down-sampled images of five coronal sections (S1–S5). Bregma (β) level is indicated. (B) PSD95 and SAP102 synaptome parameters in ARA anatomical subregions. Parameter units are as follows: density, number of puncta per 100 μm 2 ; size, μm 2 ; intensity, mean gray value per punctum (AU × 10 4 ); colocalization, %. (C) Synaptome maps of delineated regions in five sections. Median punctum density (i), intensity (ii), size (iii), and colocalization (iv) for PSD95 (top) and SAP102 (bottom) are shown. Parameter units: density, number of puncta per 100 μm 2 ; intensity, mean gray value per punctum (AU); size, μm 2 ; colocalization, %. (D) PSD95 punctum intensity in delineated subregions of the hippocampus and cortex. CA1, cornu ammonis; CX, isocortex; DG, dentate gyrus. (E) SAP102 punctum intensity in delineated subregions of hippocampus and cortex. (F) Similarity matrix between pairs of subregions (rows and columns). White lines outline three major blocks (cerebrum, brainstem, and cerebellum). Pink box highlights hippocampal subregions. (G) Dendrogram showing hierarchical organization of subregions based on their similarity. Branch tips represent delineated subregions, colored as in (B).

Article Snippet: Three-way colocalization was then measured by Imaris Triple Colocalization plugin, developed by Michael Adams, using a distance threshold of 600 nm.

Techniques: Expressing

Journal: Neuron

Article Title: Architecture of the Mouse Brain Synaptome

doi: 10.1016/j.neuron.2018.07.007

Figure Lengend Snippet:

Article Snippet: Three-way colocalization was then measured by Imaris Triple Colocalization plugin, developed by Michael Adams, using a distance threshold of 600 nm.

Techniques: Western Blot, Virus, Recombinant, Plasmid Preparation, Sequencing, Software, Comparison